Index

A

add_outliers_to_heatmap() (in module bidsmreye.visualize) add_qc_to_sidecar() (in module bidsmreye.quality_control)

add_timestamps_to_dataframe() (in module bidsmreye.utils) available_models() (in module bidsmreye.defaults)

B

bids_filter (bidsmreye.configuration.Config attribute) bidsmreye module bidsmreye() (in module bidsmreye.bidsmreye) bidsmreye.bids_utils module bidsmreye.bidsmreye module bidsmreye.configuration module bidsmreye.defaults module bidsmreye.download module

bidsmreye.generalize module bidsmreye.methods module bidsmreye.prepare_data module bidsmreye.quality_control module bidsmreye.utils module bidsmreye.visualize module

C

check_argument() (bidsmreye.configuration.Config method) check_if_file_found() (in module bidsmreye.utils) check_layout() (in module bidsmreye.bids_utils) collect_group_qc_data() (in module bidsmreye.visualize) combine_data_with_empty_labels() (in module bidsmreye.prepare_data) compute_displacement() (in module bidsmreye.quality_control) compute_displacement_and_outliers() (in module bidsmreye.quality_control) compute_robust_outliers() (in module bidsmreye.quality_control) Config (class in bidsmreye.configuration)

config_to_dict() (in module bidsmreye.configuration) convert_confounds() (in module bidsmreye.generalize) copy_license() (in module bidsmreye.utils) coregister_and_extract_data() (in module bidsmreye.prepare_data) create_and_save_figure() (in module bidsmreye.generalize) create_bidsname() (in module bidsmreye.bids_utils) create_confounds_tsv() (in module bidsmreye.generalize) create_dir_for_file() (in module bidsmreye.utils) create_dir_if_absent() (in module bidsmreye.utils) create_sidecar() (in module bidsmreye.bids_utils)

D

debug (bidsmreye.configuration.Config attribute) default_log_level() (in module bidsmreye.defaults)

default_model() (in module bidsmreye.defaults) dispatch() (in module bidsmreye.bidsmreye) download() (in module bidsmreye.download)

F

force (bidsmreye.configuration.Config attribute)

G

generalize() (in module bidsmreye.generalize) get_bids_filter_config() (in module bidsmreye.configuration) get_bidsname_config() (in module bidsmreye.configuration) get_config() (in module bidsmreye.configuration)

get_dataset_layout() (in module bidsmreye.bids_utils) get_deepmreye_filename() (in module bidsmreye.utils) get_pybids_config() (in module bidsmreye.configuration) get_sampling_frequency() (in module bidsmreye.quality_control) group_report() (in module bidsmreye.visualize)

H

has_GPU (bidsmreye.configuration.Config attribute)

I

init_dataset() (in module bidsmreye.bids_utils)

init_derivatives_layout() (in module bidsmreye.bids_utils) input_dir (bidsmreye.configuration.Config attribute)

L

linear_coreg (bidsmreye.configuration.Config attribute) list_subjects() (in module bidsmreye.bids_utils)

listify() (bidsmreye.configuration.Config method) log_levels() (in module bidsmreye.defaults)

M

methods() (in module bidsmreye.methods) model_weights_file (bidsmreye.configuration.Config attribute) module bidsmreye bidsmreye.bids_utils bidsmreye.bidsmreye bidsmreye.configuration bidsmreye.defaults bidsmreye.download bidsmreye.generalize bidsmreye.methods bidsmreye.prepare_data bidsmreye.quality_control bidsmreye.utils bidsmreye.visualize

move_file() (in module bidsmreye.utils)

O

output_dir (bidsmreye.configuration.Config attribute)

P

perform_quality_control() (in module bidsmreye.quality_control) plot_group_boxplot() (in module bidsmreye.visualize) plot_heat_map() (in module bidsmreye.visualize) plot_time_series() (in module bidsmreye.visualize)

prepapre_image() (in module bidsmreye.prepare_data) prepare_data() (in module bidsmreye.prepare_data) process_subject() (in module bidsmreye.generalize) (in module bidsmreye.prepare_data) progress_bar() (in module bidsmreye.utils)

Q

qc_subject() (in module bidsmreye.quality_control)

quality_control_input() (in module bidsmreye.quality_control) quality_control_output() (in module bidsmreye.quality_control)

R

reset_database (bidsmreye.configuration.Config attribute) return_deepmreye_output_filename() (in module bidsmreye.utils)

return_desc_entity() (in module bidsmreye.bids_utils) return_regex() (in module bidsmreye.utils) run (bidsmreye.configuration.Config attribute)

S

sanitize_filename() (in module bidsmreye.bids_utils) save_sampling_frequency_to_json() (in module bidsmreye.bids_utils) set_dataset_description() (in module bidsmreye.bids_utils)

set_this_filter() (in module bidsmreye.utils) space (bidsmreye.configuration.Config attribute) subjects (bidsmreye.configuration.Config attribute)

T

task (bidsmreye.configuration.Config attribute)

time_range() (in module bidsmreye.visualize)

V

value_range() (in module bidsmreye.visualize)

visualize_eye_gaze_data() (in module bidsmreye.visualize)

W

write_dataset_description() (in module bidsmreye.bids_utils)